Biodata | CCGB home | University of Minnesota


Project information

URL http://pinetree.ccgb.umn.edu
files submissions
kingdom Planta
species Pinus taeda
agency Department of Energy
family Pinaceae
grant doepine
grantname Pine Gene Discovery

Table definitions (Metadata)


Submit a sequence to BLAST

In addition to viewing DNA sequence data, you can run BLAST on some of our specialized databases. Run BLAST at CCGB

Sequence and sequence information search tools

Additional help on searching BLAST reports.

Search BLAST reports in doepine


More information on searching BLAST reports in doepine

Find a sequence in doepine


Use this field to find a sequence in doepine by any known name.
Help on using this tool.

Contig sets in doepine

This table lists the contig sets that have been run against doepine. CCGB uses the program Phrap to create contigs. For more information, see METHODS

Library - ST   Date - Aug 17 2000   Contig set - contig_dir0
Library - PC   Date - Aug 17 2000   Contig set - contig_dir1
Library - ST   Date - Sep 18 2000   Contig set - contig_dir2
Library - Normal Expanding   Date - Feb 7 2001   Contig set - contig_dir3

Sequence length distribution in doepine


Average length of 10309 sequences is 438


Libraries in doepine

The project doepine is too large to list individual submission directories. This table divides the submissions into their respective libraries.

Normal Expanding PC ST


This page created Mon Aug 25 03:30:10 2008.

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This page was generated by software that was developed at the Center for Computational Genomics and Bioinformatics, University of Minnesota. We gratefully acknowledge the support of the USDA Agricultural Research Service for their financial support of this work, under a Co-operative Agreement, and the U.S. National Science Foundation for support under several grants under the Plant Genome Research Program.

For further information contact CCGB pipeline@ccgb.umn.edu